Finding Information #2 – Searching PubMed

PubMed is a freely available version of the U.S. National Library of Medicine’s MEDLINE database and also provides access to some additional content not selected for MEDLINE. PubMed doesn’t contain full-text articles, but may link to publishers’ websites and other resources

Access PubMed via QUT Library’s Databases and specialised search tools. You can then select Health or view all databases to find the PubMed link. When you connect to PubMed, using your QUT login details, and search for information a QUT Fulltext Finder link may appear. This allows you to check if a fulltext copy of an article is available via QUT Library.

Simple steps for searching PubMed:

  1. Identify your search terms for each of your main concepts
  2. Perform a simple search by entering terms in the PubMed search box
  3. Include terms from the controlled vocabulary MeSH (Medical Subject Headings)
  4. Use the advanced search to see your search history and combine searches
  5. Apply limits to your search results using the filters sidebar

PubMed uses Automatic Term Mapping which automatically searches for phrases and MeSH terms. Check for successful mapping to MeSH terms by viewing the “Search details” box on your Search results page.

For more help searching PubMed, check out the comprehensive online PubMed Tutorial.

Choose the right journal for your research via Think Check Submit

Quality is key to selecting the right journal to publish in and avoiding predatory publisher traps can be difficult.  In response to the problems of deceptive journals and conferences, a collection of publishers, publishing ethics groups, open access groups and academic libraries created Think Check Submit.

The campaign helps researchers identify trusted journals for their research via a simple checklist to assess the credentials of a journal or publisher.

Start the check by asking yourself some questions including:

  • Do you or your colleagues know the journal?
    – Have you read any articles in the journal before?
    – Is it easy to discover the latest papers in the journal?
  • Is the journal clear about the type of peer review it uses?
  • Are articles indexed in services that you use?

Watch the short video for more details:

.

Think Check Submit is now available in seventeen languages including Arabic, Chinese, Indonesian, Spanish and Thai.

Want to know more about how to choose journals to publish in?  Contact your Liaison Librarian and check out the Which journal? advice from QUT Library.

Finding Information #1 – Quickfind Advanced Search

Did you know that QUT Library’s Quickfind searches over 80% of all the resources available at QUT? If you are looking for a book, journal article, report or newspaper article this is a great first place to look!

Quickfind’s Advanced Search can help you find information you need efficiently. You can find the Advanced Search underneath the Quickfind Search Bar.

QUT Library Homepage with advanced search icon highlighted.

Once you are in the Advance Search screen type your keywords into the search boxes. To search efficiently, put each concept or keyword on a different line and choose the right Search Operators to separate the lines. After you’ve entered your keywords you can refine your results further by selecting certain publication years to look at or by choosing the content type you want to focus on, such as articles or books. Advanced Search also allows you to select peer reviewed sources as another option to refine your results. By refining your search using the Advanced Search you will save time and get to relevant results faster, woo!

Here are our top tips to get the most out of advanced searches –

  1. Speak the database’s language. Figure out your keywords and synonyms first and how link them with search operators used by the database so it can understand exactly what you are looking for.
  2. Look for ‘search tips’ or ‘help’ buttons within the database to identify your database’s preferred search operators.
  3. Don’t be afraid to change your search strategy. Look in your results for other keywords or synonyms you can use and try different keywords and combinations.
  4. Try new things. Change the field you are searching in. If you are getting too many results from searching All Fields, try searching for your keywords just within the abstract, or look for a particular author.

Contact your information experts for more assistance with using Quickfind’s Advanced Search.

Open science, open data – the World Science Festival Brisbane

“It’s not enough to do it; it must be communicated” – Virginia Barbour, Executive Director, Australasian Open Access Strategy Group, on a key concept in science.

Providing open access to research, including publications, data, software, methodologies and all other research outputs, is a growing worldwide initiative, as is the drive to solve real-world problems and stimulate innovation.  The lack of access to research publications and their accompanying data is inhibiting national and international collaboration, public debate and research, however, times are changing.

Originally applied only to data, the F.A.I.R. principles now apply to all research outputs, as proposed at a November 2016 meeting of the G20 Science, Technology and Innovation Ministers Meeting.  Research findings that are F.A.I.R. are Findable, Accessible, Interoperable and Reusable.

“With F.A.I.R. access, Australian research will be more visible, the broader community will have better access to well-founded knowledge, Australian researchers will be able to more easily collaborate locally and globally, including with industry, and the Australian research enterprise will be more accountable to the community it serves” – F.A.I.R. Access Working Group

Dr Salvatore Mele from the European Organization for Nuclear Research (CERN) reports that research in the field of physics has always been openly available, with researchers posting each other hard copies of publications that were submitted for review.  During the World Science Festival, which is being held in Brisbane from 22-26 March, the world-renowned Large Hadron Collider will be on display at the Queensland Museum.

Managed by CERN, the data collected from use of the Collider are published in the CERN Open Data Portal, and are accompanied by the software and documentation required to make sense of the data being shared.  Here at QUT, researchers can publish their data and accompanying material through our data repository, Research Data Finder.  We’re doing our bit to accelerate open science by providing access to open data!

Take a look at datasets that have already been added, including ‘Fusion transcripts in prostate cancer using RNA sequences derived from Australian and Chinese men’ by Dr Jyotsna Batra and Dr John Lai, and perhaps add one of your own at QUT Research Data Finder.

NEW: Sage Research Methods Video: Now on trial until May 5th

SAGE Research Methods Video has over 480 videos, including hours of tutorials, expert interviews, video case studies and mini-documentaries covering the entire research process.

Instead of reading about it, see research design and method in action! Search by type of method, professional discipline, or video type. Videos will help to bring methods to life. Stimulate class discussions by assigning videos for pre-class viewing, or use a clip in class to provide an alternative viewpoint. Videos can also be embedded into course management systems for exam preparation. Whether you are learning, doing, supervising or teaching. Students, academics and professionals can find extra help and support, to guide them through every step of their research project, or to succeed in their research methods course.

Is this something you wish to have in our collection or have a say on? Please review the resources and provide feedback here. For questions, please contact your Liaison librarian.

Who has been talking about your research? Altmetric Explorer knows.


Navigate the brave new world of alternative metrics (altmetrics) with Altmetric Explorer.

While traditional, citation-based metrics can take a significant amount of time to indicate the impact of research, altmetrics, that measure online attention, can give researchers a real-time indication of who is taking an interest in their research.

QUT researchers can now see who is talking about their research, and where.  Altmetric Explorer aggregates mentions of their works in a number of sources, including news outlets, blogs, policy documents, social media and Wikipedia, to calculate an ‘Attention Score’.  This is represented by a multi-coloured ‘doughnut’, where each colour corresponds to a type of source; the more colourful the doughnut the wider the reach.

You can use Altmetric Explorer to explore QUT’s publication data, or all research in the Altmetric database. Search by article title, keyword, researcher name, QUT faculty or school.  Currently, Altmetric Explorer only tracks QUT articles with Digital Object Identifiers (DOIs).  Register for an account in Altmetrics Explorer to access extra features.  So get ready to explore Altmetric Explorer and find out the colour of your ‘doughnut’. If you have any questions please contact your Liaison Librarian or Library Research Support.

Get your Research on at ResBaz!

Kickstart your research in 2017 with the Research Bazaar (ResBaz). It is on in Brisbane again this year and is hosted by The University of Queensland. ResBaz is an international festival celebrating digital literacies that are the foundation of modern research. It facilitates collaboration between early career researchers, PhD students, and researchers at other stages of their career using the next generation of digital research tools. You can learn from peers about the digital skills needed for cutting edge research in the 21st century!

There are several events happening in Brisbane throughout ResBaz including a Festival Day and a variety of workshops. Some of the information shared will be about OpenRefine and Web scrapers, bioinformatics as well as some Software Carpentry lessons.

For those able to get to Brisbane the details are as follows –

Where: University of Queensland, St Lucia campus (Advanced Engineering Building)

When: 7-9 February, 2017.

What: ResBaz includes several events and workshops. Registration for the market day is available and recommended. Registration for the workshops is essential.

For those who can’t to get to Brisbane, don’t worry! ResBaz is an international event and hosted in other locations around the globe so you can find a ResBaz location near you.

Can’t make it toResBaz? No worries, QUT Library offers research support to students. Check out QUT Library’s resources for researchers and the training and assistance we offer to all Higher Degree Research Students, other researchers and research support staff.

International Data Week

data

From 11th – 17th September, it is International Data Week. The theme for International Data Week is about mobilising the data revolution, exploring how to improve our knowledge and benefit society through data driven research and innovation.

While data scientists, researchers, entrepreneurs and industry leaders from across the globe gather at Denver, Colorado for the international conference, events closer to home are being held for researchers and those interested in what’s behind research data, such as managing research data, sharing and publishing research data.

Higher degree research students and new QUT researchers are encouraged to attend research skills workshops. Workshop details on the research support calendar.

QUT, together with the State Library of Queensland and ANDS (Australian National Data Service), will also host Sprint to the Finish for 23 (research data) Things. This event is an opportunity for those completing 23 (research data) Things to share what has been learned. The Sprint will also include a tour of The Cube, one of the world’s largest digital interactive learning and display spaces dedicated to providing an inspiring, explorative and participatory experience of QUT’s Science and Engineering research.

Sprint to the Finish is open to anyone, however you will need to complete at least Things 1-5 of the course. Register for this event on Eventbrite.

Reference management in the cloud with Paperpile

Paperpile is an easy to use web-based reference and document management system with secure Google sign-in that allows you to collect, organise and cite your references and documents and share them with collaborators.

Paperpile offers 15GB of free storage and import options from all major databases and other product libraries (including EndNote and Mendeley). The web-based system allows you to access your library on different computers and mobile devices without the need to download software.

As a QUT researcher you have free access to QUT’s Paperpile site licence and can find more information on our website about installing Paperpile.

 

Sharing research data

Are you a QUT researcher? Make your datasets available, discoverable and accessible with Research Data Finder

Are you a QUT researcher? Make your datasets available, discoverable and accessible with Research Data Finder

QUT researchers can now make their datasets openly available, discoverable and accessible using QUT’s Research Data Finder. Researchers can easily self-deposit datasets, quickly describe and publicly share them with the broader research community, maximising opportunities for data re-use and ensuring compliance with funders and publishers.

Two examples where researchers have shared their dataset are below.  There is a link to the dataset at the top right corner in the Access the Data section.

Why share data?

Both the ARC and NHMRC encourage the dissemination of research data (Section C of ARC Discovery grants instructions to applicants).  The Australian Code for the Responsible Conduct of Research states: “Researchers have a responsibility to their colleagues and the wider community to disseminate a full account of their research as broadly as possible.” [Section 4.4]

Public Library of Science (PLOS) and Nature journals require authors to make all data underlying the findings described in manuscripts fully available without restriction, with rare exception.

QUT’s Management of research data policy (MOPP D/2.8.7) advises that QUT ‘research data will be made available for access and re-use by other researchers subject to any contractual, ethical, privacy or confidentiality matters’.  The Guidelines for the Management of Research Data at QUT provide further details on all aspects of research data management including  access and re-use, access agreements, and a range of licences (copyright and Creative Commons).

Other benefits of sharing research datasets in Research Data Finder are:

  • An increase in citations by up to 69% (Piwowar & Vision, 2013)
  • Data is readily available for re-use when required
  • An improved research profile
  • Increased national and international opportunities for collaboration and innovation

Contact your Liaison Librarian for more information about depositing datasets into Research Data Finder